Publications of Maziar Heidari

Kreysing, J. P.; Heidari, M.; Zila, V.; Cruz-León, S.; Obarska-Kosinska, A.; Laketa, V.; Rohleder, L.; Welsch, S.; Köfinger, J.; Turoňová, B. et al.; Hummer, G.; Kräusslich, H.-G.; Beck, M.: Passage of the HIV capsid cracks the nuclear pore. Cell 188 (4), pp. 930 - 943.e21 (2025)

Heidari, M.; Sikora, M.; Hummer, G.: Refined Protein-Sugar Interactions in the Martini Force Field. Journal of Chemical Theory and Computation 20 (22), pp. 10259 - 10265 (2024)

Bullerjahn, J. T.; von Bülow, S.; Heidari, M.; Hénin, J.; Hummer, G.: Unwrapping NPT Simulations to Calculate Diffusion Coefficients. Journal of Chemical Theory and Computation 19, pp. 3406 - 3417 (2023)

Yu, M.; Heidari, M.; Mikhaleva, S.; Tan, P. S.; Mingu, S.; Ruan, H.; Reinkemeier, C. D.; Obarska-Kosinska, A.; Siggel, M.; Beck, M. et al.; Hummer, G.; Lemke, E. A.: Visualizing the disordered nuclear transport machinery in situ. Nature 617 (7959), pp. 162 - 169 (2023)

Baptista, L. A.; Dutta, R. C.; Sevilla, M.; Heidari, M.; Potestio, R.; Kremer, K.; Cortes Huerto, R.: Density-functional-theory approach to the Hamiltonian adaptive resolution simulation method. Journal of Physics: Condensed Matter 33 (18), 184003 (2021)

Heidari, M.; Kremer, K.; Golestanian, R.; Potestio, R.; Cortes Huerto, R.: Open-boundary Hamiltonian adaptive resolution. From grand canonical to non-equilibrium molecular dynamics simulations. The Journal of Chemical Physics 152 (19), 194104 (2020)

Heidari, M.; Cortes Huerto, R.; Potestio, R.; Kremer, K.: Steering a solute between coexisting solvation states: Revisiting nonequilibrium work relations and the calculation of free energy differences. The Journal of Chemical Physics 151 (14), 144105 (2019)

Heidari, M.; Satarifard, V.; Mashaghi, A.: Mapping a single-molecule folding process onto a topological space. Physical Chemistry Chemical Physics 21 (36), pp. 20338 - 20345 (2019)

Tabujew, I.; Heidari, M.; Freidel, C.; Helm, M.; Tebbe, L.; Wolfrum, U.; Nagel-Wolfrum, K.; Koynov, K.; Biehl, P.; Schacher, F. H. et al.; Potestio, R.; Peneva, K.: Tackling the Limitations of Copolymeric Small Interfering RNA Delivery Agents by a Combined Experimental-Computational Approach. Biomacromolecules 20 (12), pp. 4389 - 4406 (2019)

Heidari, M.; Cortes-Huerto, R.; Kremer, K.; Potestio, R.: Concurrent coupling of realistic and ideal models of liquids and solids in Hamiltonian adaptive resolution simulations. European Physical Journal E 41 (5), 64 (2018)

Heidari, M.; Kremer, K.; Cortes-Huerto, R.; Potestio, R.: Spatially Resolved Thermodynamic Integration: An Efficient Method To Compute Chemical Potentials of Dense Fluids. Journal of Chemical Theory and Computation 14 (7), pp. 3409 - 3417 (2018)

Heidari, M.; Kremer, K.; Potestio, R.; Cortes-Huerto, R.: Fluctuations, Finite-Size Effects and the Thermodynamic Limit in Computer Simulations: Revisiting the Spatial Block Analysis Method. Entropy 20 (4), 222 (2018)

Heidari, M.; Kremer, K.; Potestio, R.; Cortes-Huerto, R.: Finite-size integral equations in the theory of liquids and the thermodynamic limit in computer simulations. Molecular Physics 116 (21-22), pp. 3301 - 3310 (2018)

Heidari, M.; Satarifard, V.; Tans, S. J.; Ejtehadi, M. R.; Mashaghi, S.; Mashaghi, A.: Topology of internally constrained polymer chains. Physical Chemistry Chemical Physics 19 (28), pp. 18389 - 18393 (2017)

Heydari, T.; Heidari, M.; Mashinchian, O.; Wojcik, M.; Xu, K.; Dalby, M. J.; Mahmoudi, M.; Ejtehadi, M. R.: Development of a Virtual Cell Model to Predict Cell Response to Substrate Topography. ACS Nano 11 (9), pp. 9084 - 9092 (2017)

Satarifard, V.; Heidari, M.; Mashaghi, S.; Tans, S. J.; Ejtehadi, M. R.; Mashaghi, A.: Topology of polymer chains under nanoscale confinement. Nanoscale 9 (33), pp. 12170 - 12177 (2017)

Sharifi Dehsari, H.; Heidari, M.; Halda Ribeiro, A.; Tremel, W.; Jakob, G.; Donadio, D.; Potestio, R.; Asadi, K.: Combined Experimental and Theoretical Investigation of Heating Rate on Growth of Iron Oxide Nanoparticles. Chemistry of Materials 29 (22), pp. 9648 - 9656 (2017)

Heidari, M.; Cortes-Huerto, R.; Donadio, D.; Potestio, R.: Accurate and general treatment of electrostatic interaction in Hamiltonian adaptive resolution simulations. European Physical Journal - Special Topics 225 (8-9), pp. 1505 - 1526 (2016)

Heidari, M.: Development and application of Hamiltonian adaptive resolution simulations for systems having long-range interactions. Dissertation, Johannes Gutenberg-Universität, Mainz (2019)