Publications of Hanne Antila

Antila, H.; Dixit, S.; Kav, B.; Madsen, J. J.; Miettinen, M. S.; Ollila, O. H. S.: Evaluating polarizable biomembrane simulations against experiments. Journal of Chemical Theory and Computation 20 (10), pp. 4325 - 4337 (2024)

Kiirikki, A. M.; Antila, H.; Bort, L. S.; Buslaev, P.; Favela-Rosales, F.; Ferreira, T. M.; Fuchs, P. F. J.; Garcia-Fandino, R.; Gushchin, I.; Kav, B. et al.; Kučerka, N.; Kula, P.; Kurki, M.; Kuzmin, A.; Lalitha, A.; Lolicato, F.; Madsen, J. J.; Miettinen, M. S.; Mingham, C.; Monticelli, L.; Nencini, R.; Nesterenko, A. M.; Piggot, T. J.; Piñeiro, Á.; Reuter, N.; Samantray, S.; Suárez-Lestón, F.; Talandashti, R.; Ollila, O. H. S.: Overlay databank unlocks data-driven analyses of biomolecules for all. Nature Communications 15, 1136 (2024)

Antila, H.; Kav, B.; Miettinen, M. S.; Martinez-Seara, H.; Jungwirth, P.; Ollila, O. H. S.: Emerging era of biomolecular membrane simulations: automated physically-justified force field development and quality-evaluated databanks. The Journal of Physical Chemistry B 126 (23), pp. 4169 - 4183 (2022)

Antila, H.; Wurl, A.; Ollila, O. H. S.; Miettinen, M. S.; Ferreira, T. M.: Rotational decoupling between the hydrophilic and hydrophobic regions in lipid membranes. Biophysical Journal 121, pp. 68 - 78 (2022)

Schullian, O.; Antila, H.; Heazlewood, B. R.: A variable time step self-consistent mean field DSMC model for three-dimensional environments. The Journal of Chemical Physics 156 (12), 124309 (2022)

Antila, H.; M. Ferreira, T.; Ollila, O. H. S.; Miettinen, M. S.: Using open data to rapidly benchmark biomolecular simulations: phospholipid conformational dynamics. Journal of Chemical Information and Modeling 61 (2), pp. 938 - 949 (2021)

Yuan, J.; Antila, H.; Luijten, E.: Particle–particle particle–mesh algorithm for electrolytes between charged dielectric interfaces. The Journal of Chemical Physics 154 (9), 094115 (2021)

Yuan, J.; Antila, H.; Luijten, E.: Structure of polyelectrolyte brushes on polarizable substrates. Macromolecules 53 (8), pp. 2983 - 2990 (2020)

Antila, H.; Buslaev, P.; Favela-Rosales, F.; Mendes Ferreira, T.; Gushchin, I.; Javanainen, M.; Kav, B.; Madsen, J. J.; Melcr, J.; Miettinen, M. S. et al.; Määttä, J.; Nencini, R.; Ollila, O.H. S.; Piggot, T. J.: Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The Journal of Physical Chemistry B 123 (43), pp. 9066 - 9079 (2019)

Antila, H.; Miettinen, M. S.: Data-driven development of lipid force fields for molecular dynamics simulations. In Biophysical Journal, 118 (3, Supplement 1), pp. 141a - 142a. Cell Press, Cambridge, Mass. (2020)

Kiirikki, A. M.; Antila, H.; Bort, L.; Buslaev, P.; Favela, F.; Ferreira, T. M.; Fuchs, P. F.J.; Garcia-Fandino, R.; Gushchin, I.; Kav, B. et al.; Kula, P.; Kurki, M.; Kuzmin, A.; Madsen, J. J.; Miettinen, M. S.; Nencini, R.; Piggot, T.; Piñeiro, Á.; Samantray, S.; Suarez-Leston, F.; Ollila, O. H. S.: NMRlipids Databank makes data-driven analysis of biomembrane properties accessible for all. ChemRxiv: the Preprint Server for Chemistry (2023)

Antila, H.; Wurl, A.; Ollila, O. H. S.; Miettinen, M. S.; Ferreira, T. M.: Quasi-uncoupled rotational diffusion of phospholipid headgroups from the main molecular frame. arxiv Condensed Matter: Materials Science, 2009.06774 (2020)