Publications of Aoife C. Fogarty

Guzman, H. V.; Tretyakov, N.; Kobayashi, H.; Fogarty, A. C.; Kreis, K.; Krajniak, J.; Junghans, C.; Kremer, K.; Stühn, T.: ESPResSo++ 2.0: Advanced methods for multiscale molecular simulation. Computer Physics Communications 238, pp. 66 - 76 (2019)

Duboue-Dijon, E.; Pluharova, E.; Domin, D.; Sen, K.; Fogarty, A. C.; Cheron, N.; Laage, D.: Coupled Valence-Bond State Molecular Dynamics Description of an Enzyme-Catalyzed Reaction in a Non-Aqueous Organic Solvent. The Journal of Physical Chemistry B 121 (29), pp. 7027 - 7041 (2017)

Fiorentini, R.; Kremer, K.; Potestio, R.; Fogarty, A. C.: Using force-based adaptive resolution simulations to calculate solvation free energies of amino acid sidechain analogues. The Journal of Chemical Physics 146 (24), 244113 (2017)

Fogarty, A. C.; Potestio, R.; Kremer, K.: Erratum: “Adaptive resolution simulation of a biomolecule and its hydration shell: Structural and dynamical properties” [J. Chem. Phys. 142, 195101 (2015)]. The Journal of Chemical Physics 146 (4), 049901 (2017)

Duboue-Dijon, E.; Fogarty, A. C.; Hynes, J. T.; Laage, D.: Dynamical Disorder in the DNA Hydration Shell. Journal of the American Chemical Society 138 (24), pp. 7610 - 7620 (2016)

Fogarty, A. C.; Potestio, R.; Kremer, K.: A multi-resolution model to capture both global fluctuations of an enzyme and molecular recognition in the ligand-binding site. Proteins: Structure, Function, and Bioinformatics 84 (12), pp. 1902 - 1913 (2016)

Kreis, K.; Potestio, R.; Kremer, K.; Fogarty, A. C.: Adaptive Resolution Simulations with Self-Adjusting High-Resolution Regions. Journal of Chemical Theory and Computation 12 (8), pp. 4067 - 4081 (2016)

Fogarty, A. C.; Potestio, R.; Kremer, K.: Adaptive resolution simulation of a biomolecule and its hydration shell: Structural and dynamical properties. The Journal of Chemical Physics 142 (19 ), 195101 (2015)

Kreis, K.; Fogarty, A. C.; Kremer, K.; Potestio, R.: Reply to comments by R. Klein on Advantages and challenges in coupling an ideal gas to atomistic models in adaptive resolution simulations. European Physical Journal 224 (12), pp. 2505 - 2506 (2015)

Kreis, K.; Fogarty, A. C.; Kremer, K.; Potestio, R.: Advantages and challenges in coupling an ideal gas to atomistic models in adaptive resolution simulations. European Physical Journal 224 (12), pp. 2289 - 2304 (2015)

Fogarty, A. C.; Fiorentini, R.; Kremer, K.; Potestio, R.: Insights into Molecular Recognition: Multi-Resolution Simulations of Proteins and their Hydration Shells to Capture both Global Fluctuations and Chemical Detail. In: NIC Series, Vol. 49, pp. 127 - 135 (Eds. Binder, K.; Müller, M.; Trautmann, A.). NIC Symposium, Jülich, February 22, 2018 - February 23, 2018. John von Neumann Institute for Computing (NIC), Jülich (2018)

Potestio, R.; Fogarty, A.; Peter, C.; Kremer, K.: Adaptive Resolution Simulation. In: Computational Trends in Solvation and Transport in Liquids - Lecture Notes, pp. 353 - 381 (Eds. Sutmann, G.; Grotendorst, J.; Gompper, G.; Marx, D.). CECAM school, 23-27 March 2015, Jülich, Germany, Jülich, March 23, 2015 - March 27, 2015. Forschungszentrum Jülich GmbH, Jülich (2015)