Publications of Ana Vila Verde

Geraili Daronkola, H.; Vila Verde, A.: Prevalence and mechanism of synergistic carboxylate-cation-water interactions in halophilic proteins. Biophysical Journal 122 (12), pp. 2577 - 2589 (2023)

Geraili Daronkola, H.; Vila Verde, A.: Proteins maintain hydration at high [KCl] concentration regardless of content in acidic amino acids. Biophysical Journal 120 (13), pp. 2746 - 2762 (2021)

Bergues Pupo, A. E.; Lipowsky, R.; Vila Verde, A.: Unfolding mechanism and free energy landscape of single, stable, alpha helices at low pull speeds. Soft Matter 16 (43), pp. 9917 - 9928 (2020)

Robalo, J. R.; Mendes de Oliveira, D.; Imhof, P.; Ben-Amotz, D.; Vila Verde, A.: Quantifying how step-wise fluorination tunes local solute hydrophobicity, hydration shell thermodynamics and the quantum mechanical contributions of solute–water interactions. Physical Chemistry Chemical Physics 22 (40), pp. 22997 - 23008 (2020)

Sebastiani, F.; Vila Verde, A.; Heyden, M.; Schwaab, G.; Havenith, M.: Cooperativity and ion pairing in magnesium sulfate aqueous solutions from the dilute regime to the solubility limit. Physical Chemistry Chemical Physics 22 (21), pp. 12140 - 12153 (2020)

Robalo, J. R.; Streacker, L. M.; Mendes de Oliveira, D.; Imhof, P.; Ben-Amotz, D.; Vila Verde, A.: Hydrophobic but water-friendly: favourable water-perfluoromethyl interactions promote hydration shell defects. Journal of the American Chemical Society 141 (40), pp. 15856 - 15868 (2019)

Robalo, J. R.; Vila Verde, A.: Unexpected Trends in the Hydrophobicity of Fluorinated Amino Acids Reflect Competing Changes in Polarity and Conformation. Physical Chemistry Chemical Physics 21 (4), pp. 2029 - 2038 (2019)

Bergues Pupo, A. E.; Blank, K. G.; Lipowsky, R.; Vila Verde, A.: Trimeric coiled coils expand the range of strength, toughness and dynamics of coiled coil motifs under shear. Physical Chemistry Chemical Physics 20 (46), pp. 29105 - 29115 (2018)

Bergues Pupo, A. E.; Göktas, M.; Tunn, I.; López García, P.; Vila Verde, A.; Blank, K.; Valleriani, A.: Goodness of fit testing in dynamic single-molecule force spectroscopy. The Journal of Chemical Physics 149, 244120 (2018)

Goktas, M.; Luo, C.; Sullan, R. M. A.; Bergues-Pupo, A. E.; Lipowsky, R.; Vila Verde, A.; Blank, K. G.: Molecular mechanics of coiled coils loaded in the shear geometry. Chemical Science 9 (20), pp. 4610 - 4621 (2018)

Kashefolgheta, S.; Vila Verde, A.: Developing force fields when experimental data is sparse: AMBER/GAFF-compatible parameters for inorganic and alkyl oxoanions. Physical Chemistry Chemical Physics 19 (31), pp. 20593 - 20607 (2017)

Robalo, J. R.; Huhmann, S.; Koksch, B.; Verde, A. V.: The multiple origins of the hydrophobicity of fluorinated apolar amino acids. Chem 3 (5), pp. 881 - 897 (2017)

Satarifard, V.; Kashefolgheta, S.; Verde, A. V.; Grafmüller, A.: Is the solution activity derivative sufficient to parametrize ion–ion interactions? Ions for tip5p water. Journal of Chemical Theory and Computation 13 (5), pp. 2112 - 2122 (2017)

Vila Verde, A.; Frenkel, D.: Kinetics of formation of bile salt micelles from coarse-grained Langevin Dynamics simulations. Soft Matter 12 (23), pp. 5172 - 5179 (2016)

Vila Verde, A.; Santer, M.; Lipowsky, R.: Solvent-shared pairs of densely charged ions induce intense but short-range supra-additive slowdown of water rotation. Physical Chemistry Chemical Physics 18 (3), pp. 1918 - 1930 (2016)

Minh Dang, T.; Vila Verde, A.; Van Nguyen, D.; Bolhuis, P. G.; Schall, P.: Temperature-sensitive colloidal phase behavior induced by critical Casimir forces. JOURNAL OF CHEMICAL PHYSICS 139 (9), 094903 (2013)

Tong, Y.; Vila Verde, A.; Campen, K.: The Free OD at the Air/D₂O Interface is Structurally and Dynamically Heterogeneous. The Journal of Physical Chemistry B 117 (39), pp. 11753 - 11764 (2013)

Vila Verde, A.; Lipowsky, R.: Cooperative slowdown of water rotation near densely charged ions is intense but short-ranged. The Journal of Physical Chemistry B 117, pp. 10556 - 10566 (2013)

Verde, A. V.; Bolhuis, P. G.; Campen, R. K.: Statics and dynamics of free and hydrogen-bonded OH groups at the air/water interface. The Journal of Physical Chemistry B 116 (31), pp. 9467 - 9481 (2012)

Hsieh, C.-S.; Campen, R. K.; Vila Verde, A.; Bolhuis, P.; Nienhuys, H.-K.; Bonn, M.: Ultrafast Reorientation of Dangling OH Groups at the Air-Water Interface Using Femtosecond Vibrational Spectroscopy. Physical Review Letters 107, 116102 (2011)